PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G223300.1
Common NameB456_002G223300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 219aa    MW: 24581.6 Da    PI: 4.8944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G223300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000132547123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+Cp C k F++   L  H++ H
  Gorai.002G223300.1 25 YECPSCFKIFNSTPALCGHQNAH 47
                        99******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.9722552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAQPGESDSK GKAVVVDSEE PKAEYECPSC FKIFNSTPAL CGHQNAHRLV KEPMKMSPVL  60
AAVLNNPLPP FHKPFLIPPK TKPAANKELI SKQPTANQSP RHHPYKRHDE EANATDQLQD  120
KLMKQTTQEG EDFLRQLIRN EAQYEYNDQE EYTDTDTQFL TMDLLGEWMP ISGFGDDGHH  180
LGTPRKYPME MERETDLQIG LSATASTGDL DLELKLGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007029046.11e-71Uncharacterized protein TCM_024958
TrEMBLA0A0D2NRJ51e-164A0A0D2NRJ5_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2228334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.15e-06C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]